deeplotyper.alignment_utils

Functions

apply_alignment_gaps(seq1, seq2, blocks1, ...)	Insert gaps so aligned blocks line up between two sequences.
cache(user_function, /)	Simple lightweight unbounded cache.
make_aligner([mode, match_score, ...])	Return a cached PairwiseAligner configured with custom scoring.

Classes

PairwiseAligner([scoring])	Performs pairwise sequence alignment using dynamic programming.
Sequence()	All the operations on a read-only sequence.

Exceptions

AlignmentError	Base class for alignment‐related errors.
BlockValidationError	Raised when an aligned‐block interval is invalid.