deeplotyper
===========

.. automodule:: deeplotyper

   
   .. rubric:: Functions

   .. autosummary::
   
      apply_alignment_gaps
      build_linear_coords
      build_raw_genome_coords
      build_raw_transcript_coords
      find_orfs
      get_longest_orf
      make_aligner
   
   .. rubric:: Classes

   .. autosummary::
   
      HaplotypeRemapper
      SequenceCoordinateMapper
   
.. rubric:: Modules

.. autosummary::
   :toctree:
   :recursive:

   alignment_utils
   coordinate_utils
   data_models
   extras
   mapper
   orf_utils
   remapper
   vcf_haploevents