deeplotyper.mapper
==================

.. automodule:: deeplotyper.mapper

   
   .. rubric:: Functions

   .. autosummary::
   
      apply_alignment_gaps
      build_raw_genome_coords
      build_raw_transcript_coords
      make_aligner
   
   .. rubric:: Classes

   .. autosummary::
   
      BaseCoordinateMapping
      CodonCoordinateMapping
      ExonDef
      MappingEntry
      RawBase
      Seq
      SequenceCoordinateMapper
      SequenceMappingResult
      TranscriptMappingResult
      defaultdict